PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC17326_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 307aa    MW: 34467.9 Da    PI: 7.6015
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC17326_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702193.47.6e-601052432154
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 
                  r+ +++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s+++++s+ kr             + +++     
  RrC17326_p1 105 RQASMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSSSSRETQNSNAKR------------LREENG----F 186
                  67889***************************************************9977665443333333332............221222....2 PP

       DUF702 100 letsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                     ++lP+evss+ vfrcvrvss+++  +++e+aYqtav+igGh+fkGiLydqG+++
  RrC17326_p1 187 EVSQNLPPEVSSPVVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHIFKGILYDQGPDQ 243
                  23456*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-61108242IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.7E-28110152IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016243.5E-25192241IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGTFYLGGR DNNKQDHHQV DKSNYLYLYK DEIYNTNKGF EIWPPRYFQE QQQQHVTAPA  60
NFYSFGMVSG GSSSNNNNNN NNNRSRSLHF NVVSDHEPGG FTVTRQASMN CQDCGNQAKK  120
DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSSSSR ETQNSNAKRL  180
REENGFEVSQ NLPPEVSSPV VFRCVRVSSI EEDEDDQEYA YQTAVNIGGH IFKGILYDQG  240
PDQDHHHQLN LLAPTATTTK AEETAAKTAV TVAGNNNTGS ILDPSVLYPV QLNSYISGTP  300
FFTPTRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895861e-165AC189586.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH012I05, complete sequence.
GenBankGU2052671e-165GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104702.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ51e-166SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLM4CHR60.0M4CHR6_BRARP; Uncharacterized protein
STRINGBra003749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-137SHI-related sequence 5